Hey I flipped my Scrambler 500 and before I turned it back over there was a puddle of red fluid and even though I dont see where it cam from but it must be tranny fluid. Where and how do I check the level of the tranny fluid at?

 

Are you sure that wasn't synthetic oil? When a 500 ends up on its side, oil will flow from the oil tank into the air filter housing.
The trans fluid check is down near the master cylinder for the rear brake. Unscrew the bolt to check the fluid.